LINE2A_CE (DF0001416)

LINE2A_CE is a non-LTR retrotransposon

Description

LINE2A_CE is a non-LTR retrotransposon related to the CR1 superfamily. Two open reading frames, ORF1 (position 71-883) and ORF2 (position 953-3955) encode two proteins. The second protein is a CR1-like reverse transcriptase. Protein encoded by ORF1 is C.elegans specific. LINE2A_CE does not generate target-site duplications upon its integration in the genome; its 3'-tail ends by (TATA)n.

References

  1. Evolutionary relationships among the members of an ancient class of non-LTR retrotransposons found in the nematode Caenorhabditis elegans.
    MarĂ­n I, Plata-Rengifo P, Labrador M, Fontdevila A;
    Mol Biol Evol 1998;15:1390-1402. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily CR1

Hit Statistics

The model is 4082 positions long. The average length of non-redundant hits to the model is 693.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Caenorhabditis elegans 56 236 51 203

External Database Links

  • Repbase : LINE2A_CE [Requires Repbase registration]