HATN1_CE nonautonomous DNA transposon
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HATN1_CE is an old family of nonautonomous DNA transposons. HATN1_CE elements are flanked by 8-bp target site duplications. The consensus sequence forms a nearly perfect palindrome.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 265 positions long. The average length of non-redundant hits to the model is 175.6. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : HATN1_CE [Requires Repbase registration]