HAT1_CE nonautonomous DNA transposon
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HAT1_CE is a putative non-autonomous DNA transposon; it generates duplication of 8 bp-long target site upon integration in the genome. HAT1_CE has 18 and 140 bp-long perfect and non-perfect TIRs, respectively. The length of the target site duplications indicates that transposase encoded by the autonomous HAT1_CE-like element is related to the HAT superfamily.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 495 positions long. The average length of non-redundant hits to the model is 293.2. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : HAT1_CE [Requires Repbase registration]