CER4-I_CE (DF0001374)
CER4-I_CE is an internal portion of the CER4_CE LTR retrotransposon.
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
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References
-
Genomic analysis of Caenorhabditis elegans reveals ancient families of retroviral-like elements.
Bowen NJ, McDonald JF;
Genome Res 1999;9:924-935. Pubmed -
Evolutionary history of Cer elements and their impact on the C. elegans genome.
Ganko EW, Fielman KT, McDonald JF;
Genome Res 2001;11:2066-2074. Pubmed
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | Retrotransposon | Article |
| Class | LTR | Article |
| Superfamily | Gypsy | Article |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 4754 positions long. The average length of non-redundant hits to the model is 1109.6. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Caenorhabditis elegans | 5 | 38 | 5 | 29 |
External Database Links
- Repbase : CER4-I_CE [Requires Repbase registration]