Conserved repeat present in placental mammals and marsupials.
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Terminal TA of the consensus may or may not represent TSDs. First 58 and final 36 bp matches those of Mariner-5_SM and SMAR28, both Tiggers in the planarian Schmidtea mediterranea genome. The 5'-end is determined. The 5'-end sequence shows distant similarity with tRNA, particularly A and B box.
Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
Biol Direct 2012;7:36-36. Pubmed
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 192 positions long. The average length of non-redundant hits to the model is 150.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : UCON55 [Requires Repbase registration]