UCON55 (DF0001314)

Conserved repeat present in placental mammals and marsupials.

Description

Terminal TA of the consensus may or may not represent TSDs. First 58 and final 36 bp matches those of Mariner-5_SM and SMAR28, both Tiggers in the planarian Schmidtea mediterranea genome. The 5'-end is determined. The 5'-end sequence shows distant similarity with tRNA, particularly A and B box.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Tigger

Hit Statistics

The model is 192 positions long. The average length of non-redundant hits to the model is 150.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 123 126 50 50
Homo sapiens 1153 1277 449 469

External Database Links

  • Repbase : UCON55 [Requires Repbase registration]