X1_DNA (DF0001305)

Conserved repetitive element present in placental mammals.

Description

23 bp TIRs. Non-autonomous Tigger derivative. Beginning of the ORF at 377-625 encodes a peptide similar to the beginning of Tigger transposases like Mariner-3_Crp_tp and MarsTigger6_tp.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Tigger

Hit Statistics

The model is 746 positions long. The average length of non-redundant hits to the model is 277.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 135 171 82 101
Homo sapiens 487 776 387 557

External Database Links

  • Repbase : X1_DNA [Requires Repbase registration]