hAT-1_Mam (DF0001293)

hAT-Tag1 DNA transposon, hAT-1_Mam subfamily


23 bp TIRs. Near-identical to hAT-1_AMi, which was active in the ancestor of all crocodiles. ORF 1007-2917 encodes a transposase related to other Tag1-group hAT tranposases, like hAT-13_AMi_tp and HAT-25_SM_tp. Occasionally found at orthologous places in marsupial and eutheria. There are copies in platypus, but it is unclear that they are at orthologous sites


Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Tag1

Hit Statistics

The model is 3469 positions long. The average length of non-redundant hits to the model is 380.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 238 269 179 197
Homo sapiens 1046 1592 793 1166

External Database Links

None recorded for this entry