X6b_DNA (DF0001285)

Conserved repeat present in placental mammals and marsupials.

Description

19-bp TIR. Some found at orthologous positions in all therians.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Tigger

Hit Statistics

The model is 239 positions long. The average length of non-redundant hits to the model is 175.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 411 486 183 209
Homo sapiens 3075 4196 1236 1471

External Database Links

  • Repbase : X6b_DNA [Requires Repbase registration]