X30_DNA (DF0001282)

Conserved repeat present in placental mammals and marsupials.

Description

Basically a long hairpin with a loop from pos 158-230. The terminal bases may be TSDs. Present at orthologous sites in placentals and marsupials, absent from platypus.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily Undefined

Hit Statistics

The model is 398 positions long. The average length of non-redundant hits to the model is 222.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 251 387 150 200
Homo sapiens 1028 1808 640 950

External Database Links

  • Repbase : X30_DNA [Requires Repbase registration]