X15_LINE (DF0001280)

Repetitive element conserved in all mammals.

Description

Fragment. ORF 1-360 encodes the N terminus of a pol most similar to those of L2 LINEs in fishes (Danio, Takifugu, Latimeria), including Maui. Found at orthologous sites in theria and platypus.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L2

Hit Statistics

The model is 361 positions long. The average length of non-redundant hits to the model is 223.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 16 16 13 13
Homo sapiens 36 39 23 25

External Database Links

  • Repbase : X15_LINE [Requires Repbase registration]