HERV9NC (DF0001278)

Internal region of an ERV1 endogenous retrovirus, HERV9NC subfamily

Description

Non-autonomous. Flanked by LTR12C LTRs. Like HERV9, but an internal deletion (replaced with a GA-rich sequence at 5000-5222) has halved the pol and envelope genes. Intact gag: 1336-2796.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERV1 Article

Hit Statistics

The model is 6118 positions long. The average length of non-redundant hits to the model is 1876.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 350 6714 300 4798

External Database Links

None recorded for this entry