Internal region of an ERV1 endogenous retrovirus, HERV9NC subfamily
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Non-autonomous. Flanked by LTR12C LTRs. Like HERV9, but an internal deletion (replaced with a GA-rich sequence at 5000-5222) has halved the pol and envelope genes. Intact gag: 1336-2796.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 6118 positions long. The average length of non-redundant hits to the model is 1876.7. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
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