UCON58 (DF0001274)

Conserved repeat present in placental mammals and marsupials.

Description

Positions 4-190 form a hairpin with 292-475, with intervening loop from 191-291. Classification as possible DNA transposon only based on that. Absent from monotremes, present in marsupials and eutheria.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily Undefined

Note: Uncertain classification.

Hit Statistics

The model is 485 positions long. The average length of non-redundant hits to the model is 235.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 79 131 32 50
Homo sapiens 371 719 199 327

External Database Links

  • Repbase : UCON58 [Requires Repbase registration]