Repetitive element conserved in all mammals.
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TA TSDs. 16-18 bp imperfect TIRs. Closely related to Mariner-N1_XT in Xenopus, but with the lack of an autonomous element or coding sequence similarity, a more precise classification than TcMar is not yet possible.
Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
Biol Direct 2012;7:36-36. Pubmed
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 602 positions long. The average length of non-redundant hits to the model is 289.4. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : UCON44 [Requires Repbase registration]