UCON44 (DF0001259)

Repetitive element conserved in all mammals.

Description

TA TSDs. 16-18 bp imperfect TIRs. Closely related to Mariner-N1_XT in Xenopus, but with the lack of an autonomous element or coding sequence similarity, a more precise classification than TcMar is not yet possible.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar

Hit Statistics

The model is 602 positions long. The average length of non-redundant hits to the model is 289.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 84 94 55 59
Homo sapiens 448 553 317 378

External Database Links

  • Repbase : UCON44 [Requires Repbase registration]