Eutr5 (DF0001258)

Ancient interspersed repetitive sequence from eutherian mammals.

Description

>71% identical to consensus. Origin unknown. More than 200 copies in eutherian mammals. Not present in opossum. ; but it shows no similarity to known SINEs and LINEs. Provisionally guessed LTR because of TG...CA termini but no obvious TSDs nor an obvious (AWTAAA) poly A signal in either orientation. GA-rich 5' end and C-rich satellite-like 3' tail support classification as a SINE. Present at orthologous sites in elephants and humans, absent in opossum.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Undefined

Note: Uncertain classification.

Hit Statistics

The model is 1130 positions long. The average length of non-redundant hits to the model is 461.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 29 30 29 30
Homo sapiens 381 504 338 443

External Database Links

  • Repbase : Eutr5 [Requires Repbase registration] Report