Charlie31a (DF0001244)

hAT-Charlie DNA transposon, Charlie31a subfamily

Description

8 bp TSDs with NNCTAGNN preference. Terminal 80-90 bp similar to those of autonomous Charlies (like Chaplin6_FR and Charlie17), on which the orientation is based. Present in elephant, sloth, human, absent in marsupials.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 554 positions long. The average length of non-redundant hits to the model is 302.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 118 144 78 84
Homo sapiens 628 911 519 708

External Database Links

None recorded for this entry