Charlie31a (DF0001244)

hAT-Charlie DNA transposon, Charlie31a subfamily


8 bp TSDs with NNCTAGNN preference. Terminal 80-90 bp similar to those of autonomous Charlies (like Chaplin6_FR and Charlie17), on which the orientation is based. Present in elephant, sloth, human, absent in marsupials.


Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 554 positions long. The average length of non-redundant hits to the model is 302.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 118 144 78 84
Homo sapiens 628 911 519 708

External Database Links

None recorded for this entry