X11_DNA (DF0001242)

Repetitive element conserved in all mammals.

Description

23 bp TIRs. Present at orthologous sites in all theria, but not in monotremes.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Tigger

Hit Statistics

The model is 487 positions long. The average length of non-redundant hits to the model is 238.4. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 72 146 32 48
Homo sapiens 329 737 186 297

External Database Links

  • Repbase : X11_DNA [Requires Repbase registration]