X32_DNA (DF0001238)

Repetitive element conserved in all mammals.

Description

~92-bp TIR. Very similar to Mariner-N7_Crp that was active in an ancestral crocodilian (or earlier). Found at orthologous sites in placentals and marsupials but not in monotremes.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Tc1

Hit Statistics

The model is 352 positions long. The average length of non-redundant hits to the model is 242.3. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 68 92 36 45
Homo sapiens 359 536 252 335

External Database Links

  • Repbase : X32_DNA [Requires Repbase registration]