UCON105 (DF0001237)

Repetitive element conserved in all mammals.

Description

Imperfect 14 bp TIRs. 8 bp TSDs with a bias for NTTTAAAN. In all mammals, including platypus, absent from sauropsids.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT?

Note: Uncertain classification.

Hit Statistics

The model is 340 positions long. The average length of non-redundant hits to the model is 222.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 197 208 118 123
Homo sapiens 1432 1600 823 902

External Database Links

  • Repbase : UCON105 [Requires Repbase registration]