MARE4 (DF0001236)
Conserved repeat present in placental mammals and marsupials.
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
13 bp imperfect TIRs. Termini similar to those of some Tip100 elements, like hAT-1001d2_Croc, hAT-14N1_ZM and DNA8-89_AP. Possible 8 bp TSDs remnants. A few at orthologous sites in marsupials; absent from platypus.
References
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Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
Biol Direct 2012;7:36-36. Pubmed
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | DNA Transposon | Article |
| Class | Cut and Paste | |
| Superfamily | hAT-Tip100 |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 164 positions long. The average length of non-redundant hits to the model is 134.6. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Mus musculus | 77 | 79 | 28 | 29 |
| Homo sapiens | 468 | 485 | 256 | 261 |
External Database Links
- Repbase : MARE4 [Requires Repbase registration]