MARE4 (DF0001236)

Conserved repeat present in placental mammals and marsupials.

Description

13 bp imperfect TIRs. Termini similar to those of some Tip100 elements, like hAT-1001d2_Croc, hAT-14N1_ZM and DNA8-89_AP. Possible 8 bp TSDs remnants. A few at orthologous sites in marsupials; absent from platypus.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Tip100

Hit Statistics

The model is 164 positions long. The average length of non-redundant hits to the model is 134.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 77 79 28 29
Homo sapiens 468 485 256 261

External Database Links

  • Repbase : MARE4 [Requires Repbase registration]