Repetitive element conserved in all mammals.
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Fragment. ORF1-357 encodes the N terminus of a Jockey-like pol, most similar to that of Vingi elements in crocodilians and Vingi-1_EE_pol in the hedgehog. Present at orthologous sites in placentals and platypus.
Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
Biol Direct 2012;7:36-36. Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 371 positions long. The average length of non-redundant hits to the model is 220.7. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : X12_LINE [Requires Repbase registration]