X12_LINE (DF0001235)

Repetitive element conserved in all mammals.

Description

Fragment. ORF1-357 encodes the N terminus of a Jockey-like pol, most similar to that of Vingi elements in crocodilians and Vingi-1_EE_pol in the hedgehog. Present at orthologous sites in placentals and platypus.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily Jockey

Hit Statistics

The model is 371 positions long. The average length of non-redundant hits to the model is 220.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 25 26 20 20
Homo sapiens 66 71 45 46

External Database Links

  • Repbase : X12_LINE [Requires Repbase registration]