UCON40 (DF0001224)

Conserved repeat present in placental mammals and marsupials.

Description

TA TSDs. Closest match to the transposase of the Crocodylian-wide Mariner-5_Crp. Absent from platypus, but present in opossum genome.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Mariner

Hit Statistics

The model is 579 positions long. The average length of non-redundant hits to the model is 288.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 45 48 30 32
Homo sapiens 199 254 183 229

External Database Links

  • Repbase : UCON40 [Requires Repbase registration]