X10b_DNA (DF0001222)

Conserved repeat present in placental mammals and marsupials.

Description

19-bp imperfect TIR. Some at orthologous sites in pacentals and marsupials. Absent from platypus.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Tigger

Hit Statistics

The model is 179 positions long. The average length of non-redundant hits to the model is 144.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 107 113 32 33
Homo sapiens 860 956 262 283

External Database Links

  • Repbase : X10b_DNA [Requires Repbase registration]