EUTREP15 (DF0001217)

Conserved repetitive element present in placental mammals.

Description

TG..CA termini and presence of AATAAA at appropriate place (pos 721-726) suggests LTR.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERV1? Article

Note: Uncertain classification.

Hit Statistics

The model is 866 positions long. The average length of non-redundant hits to the model is 388.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 37 44 26 31
Homo sapiens 139 200 123 168

External Database Links

  • Repbase : EUTREP15 [Requires Repbase registration]