UCON37 (DF0001211)

Conserved repeat present in placental mammals and marsupials.

Description

17 bp TIRs, 8 bp TSDs with slight preference for GTTTAAAC. Terminal and subterminal regions match a number of Activator-like hATs.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Ac

Hit Statistics

The model is 270 positions long. The average length of non-redundant hits to the model is 194.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 92 102 37 39
Homo sapiens 403 478 195 217

External Database Links

  • Repbase : UCON37 [Requires Repbase registration]