Penelope1_Vert (DF0001208)

Penelope1_Vert subfamily

Description

Part of the 3'end of a Penelope probably active some 350 million years ago. Conserved copies found in Xenopus, alligator, turtle, chicken, platypus, and our boreoeutherian ancestor. The ORF from pos 2-946 encodes a protein similar the end of Neptune1_Nv_pol. The last 130 bp are likely to be a terminal direct repeat, though the other end is not yet defined. Part of the coding region (current pos 182-463) was originally named UCON13 as it appeared in a number of ultraconserved regions.

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily Penelope

Hit Statistics

The model is 1079 positions long. The average length of non-redundant hits to the model is 284.2. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 43 44 32 32
Homo sapiens 88 91 69 70

External Database Links

None recorded for this entry