UCON81 (DF0001207)

Conserved repeat present in placental mammals and marsupials.

Description

Appears to be a TIR of a hAT element. Reverse-complemented to match Charlies. Not present in monotremes but found in marsupials. There is a closely related young element in turtles.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 84 positions long. The average length of non-redundant hits to the model is 74.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 11 11 8 8
Homo sapiens 47 50 17 18

External Database Links

  • Repbase : UCON81 [Requires Repbase registration]