X5a_DNA (DF0001203)

Conserved repeat present in placental mammals and marsupials.

Description

12-bp TIR. Similar to DNAX-5_AP in aphids and the autonomous Aspergillus pogo element Mariner-7_AF. Occurs on at least one location at orthologous sites in eutheria and metatheria.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar

Hit Statistics

The model is 178 positions long. The average length of non-redundant hits to the model is 146.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 134 142 50 50
Homo sapiens 1002 1166 368 397

External Database Links

  • Repbase : X5a_DNA [Requires Repbase registration]