X13_LINE (DF0001198)

Repetitive element conserved in all mammals.

Description

Fragment of an L2-like LINE. ORF 1-1274 encodes a pol closest to CR1-24_DR_pol in Danio rerio. Copies occurring in turtles and crocodilians create an identical consensus as those appearing in mammals (at orthologous sites in humans and platypus). However, fragments aligned between mammals and archosaurids appear paralogous.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily L2

Hit Statistics

The model is 1446 positions long. The average length of non-redundant hits to the model is 279.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 60 64 46 47
Homo sapiens 139 146 112 115

External Database Links

  • Repbase : X13_LINE [Requires Repbase registration]