Repetitive element conserved in all mammals.
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Fragment of an L2-like LINE. ORF 1-1274 encodes a pol closest to CR1-24_DR_pol in Danio rerio. Copies occurring in turtles and crocodilians create an identical consensus as those appearing in mammals (at orthologous sites in humans and platypus). However, fragments aligned between mammals and archosaurids appear paralogous.
Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
Biol Direct 2012;7:36-36. Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1446 positions long. The average length of non-redundant hits to the model is 279.7. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : X13_LINE [Requires Repbase registration]