Charlie30a (DF0001193)

hAT-Charlie DNA transposon, Charlie30a subfamily


16 bp TIRs. Non-autonomous - shows no remnants of coding region. Termini shared with many Charlies, currently strongest with elements in the pika and little brown bat genomes. Pyrimidine-rich region at pos. 350-550 is very poorly defined and prone to give false positives. Present in placentals, marsupials and monotremes.


Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 791 positions long. The average length of non-redundant hits to the model is 386.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 11 14 11 14
Homo sapiens 205 264 205 264

External Database Links

None recorded for this entry