Charlie30a (DF0001193)

hAT-Charlie DNA transposon, Charlie30a subfamily

Description

16 bp TIRs. Non-autonomous - shows no remnants of coding region. Termini shared with many Charlies, currently strongest with elements in the pika and little brown bat genomes. Pyrimidine-rich region at pos. 350-550 is very poorly defined and prone to give false positives. Present in placentals, marsupials and monotremes.

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 791 positions long. The average length of non-redundant hits to the model is 386.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 11 14 11 14
Homo sapiens 205 264 205 264

External Database Links

None recorded for this entry