UCON51 (DF0001186)

Repetitive element conserved in all mammals.

Description

Typical TG..CA termini of LTRs and a clear 5 bp TSD suggest either an ERVL or Gypsy LTR. But 250 bp is a bit short and there is also not an obvious poly A site.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Undefined

Note: Uncertain classification.

Hit Statistics

The model is 250 positions long. The average length of non-redundant hits to the model is 172.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 26 30 18 18
Homo sapiens 47 48 33 34

External Database Links

  • Repbase : UCON51 [Requires Repbase registration]