MamRep605b (DF0001183)

MamRep605b -- putative LTR of an unclassified retrotransposon


Pos 246 - 907 similar to MamRep605, which is tentatively classified as an LTR. Corroborating this is a complex subfamily structure and the preservation of the AATAAA site between the elements. Termini are not yet determined. Copies in marsupials may be from a closely related subfamily.


Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily Undefined

Note: Uncertain classification.

Hit Statistics

The model is 901 positions long. The average length of non-redundant hits to the model is 281. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 476 768 238 377
Homo sapiens 3254 6672 2116 4269

External Database Links

None recorded for this entry