UCON78 (DF0001180)

DNA transposon conserved in all mammals.

Description

443 bp palindrome (about 80% perfect, with biggest difference between 35 and 100 bp from termini). TTAA perhaps represent the TSD.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily Undefined

Hit Statistics

The model is 443 positions long. The average length of non-redundant hits to the model is 224.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 106 158 84 118
Homo sapiens 281 464 171 264

External Database Links

  • Repbase : UCON78 [Requires Repbase registration]