UCON34 (DF0001179)

Conserved repeat present in placental mammals and marsupials.

Description

Typical Charlie TSDs and termini are similar to Chap1_Mam in ancestral mammals and to Charlies found in crocodylia (hAT-N5_AMi & hAT-N694_AMi).

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT-Charlie

Hit Statistics

The model is 231 positions long. The average length of non-redundant hits to the model is 175.3. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 111 139 67 72
Homo sapiens 710 819 372 410

External Database Links

  • Repbase : UCON34 [Requires Repbase registration]