MamRTE2 (DF0001177)

RTE-BovB retrotransposon, MamRTE2 subfamily


ORF from 2-1495. Seen both in platypus and eutherians (in relatively low copy number), the Therian copies seem somewhat different from the monotreme copies, but subfamilies are elusive. Very similar to RTE-2_Croc, but probably not the same elements.


Accession Name Wikipedia
Type Retrotransposon Article
Class LINE
Superfamily RTE-BovB

Hit Statistics

The model is 1552 positions long. The average length of non-redundant hits to the model is 277.8. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 10 12 7 8
Homo sapiens 52 63 31 36

External Database Links

None recorded for this entry