Charlie29b (DF0001176)
hAT-Charlie DNA transposon, Charlie29b subfamily
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
ORF remnant from 467-955 encodes the C-term of a transposase with consensus 49% identical (66% similar) to Charlie25_tp in mammals, hAT-1_MEu in marsupials, and Chaplin5_FR_tp in Fugu. Positions 1-467 and 913-1194 comprise the previously described subfamily Charlie29a. Present at orthologous sites throughout Eutheria, but not in marsupials.
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | DNA Transposon | Article |
| Class | Cut and Paste | |
| Superfamily | hAT-Charlie |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 1194 positions long. The average length of non-redundant hits to the model is 281.2. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Mus musculus | 220 | 824 | 108 | 315 |
| Homo sapiens | 955 | 3720 | 740 | 2430 |
External Database Links
None recorded for this entry