UCON69 (DF0001175)

Repetitive element conserved in all mammals.

Description

Possible TSD with NCTATAGN preference, but only base on flanking bases on 5prime end. 3prime end still unfinished.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT?

Note: Uncertain classification.

Hit Statistics

The model is 486 positions long. The average length of non-redundant hits to the model is 233.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 13 13 9 9
Homo sapiens 46 47 24 24

External Database Links

  • Repbase : UCON69 [Requires Repbase registration]