EutTc1-N1 (DF0001170)
Ancient Mariner/Tc1 DNA transposon from eutherian mammals.
Description
A brief description of the entry. Suggestions for modification to this description can be submitted using the adjacent pencil icon.
Almost identical to Tc1-N1_MD in marsupials. No evidence for orthologous copies between marsupials and eutheria. A more common related element is EutTc1-N2, that is more or less a hairpin loop of the first 166 bp of EutTc1-N1.
Classification
| Accession | Name | Wikipedia |
|---|---|---|
| Type | DNA Transposon | Article |
| Class | Cut and Paste | |
| Superfamily | TcMar-Tc1 |
Hit Statistics
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 588 positions long. The average length of non-redundant hits to the model is 206.4. This table shows the number of hits above score thresholds:
| Species | Gathering | Trusted | ||
|---|---|---|---|---|
| non-redundant | all hits | non-redundant | all hits | |
| Mus musculus | 8 | 47 | 5 | 14 |
| Homo sapiens | 43 | 361 | 34 | 266 |