X33a_DNA (DF0001167)

Mariner DNA conserved in all mammals.

Description

Present at orthologous sites in all mammals. Similar at start and end to Mariner-N10_Crp in an ancestral crocodilian, but not the same element.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Tc1

Hit Statistics

The model is 375 positions long. The average length of non-redundant hits to the model is 238.9. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 30 41 19 23
Homo sapiens 65 122 52 71

External Database Links

  • Repbase : X33a_DNA [Requires Repbase registration]