X26_DNA (DF0001162)

Conserved repeat present in placental mammals and marsupials.

Description

Complete 3end, missing 5end. Contains a coding region remnant from pos 177-488 for a peptide 68% identical (78% similar) to the Tigger transposase Mariner-2_AMi_tp.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily TcMar-Tigger

Hit Statistics

The model is 891 positions long. The average length of non-redundant hits to the model is 321.1. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 124 140 110 124
Homo sapiens 870 1611 721 1031

External Database Links

  • Repbase : X26_DNA [Requires Repbase registration]