UCON73 (DF0001159)

Repetitive element conserved in all mammals.

Description

14 bp TIRs. 8 bp TSDs with a bias for YTTTAAAR target sites. Reverse complement matches UCON105. Present in therians and monotremes.

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type DNA Transposon Article
Class Cut and Paste
Superfamily hAT

Hit Statistics

The model is 169 positions long. The average length of non-redundant hits to the model is 146.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 130 131 50 50
Homo sapiens 550 585 233 238

External Database Links

  • Repbase : UCON73 [Requires Repbase registration]