UCON41 (DF0001155)

Conserved repeat present in placental mammals and marsupials.

Description

Perhaps an LTR. Theria-specific (not present in platypus, but found in opossum).

References

  1. Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates.
    Jurka J, Bao W, Kojima KK, Kohany O, Yurka MG;
    Biol Direct 2012;7:36-36. Pubmed

Classification

Accession Name Wikipedia
Type Unknown
Class Unknown
Superfamily Undefined

Hit Statistics

The model is 501 positions long. The average length of non-redundant hits to the model is 277. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 156 164 88 92
Homo sapiens 962 1187 635 750

External Database Links

  • Repbase : UCON41 [Requires Repbase registration]