MLT1B (DF0001127)

MLT1B Long Terminal Repeat for ERVL-MaLR retrotransposon

Description

MLT1B (Mammalian LTR Transposon) has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).

References

  1. Medium reiteration frequency repetitive sequences in the human genome.
    Kaplan DJ, Jurka J, Solus JF, Duncan CH;
    Nucleic Acids Res 1991;19:4731-4738 Pubmed

  2. Identification of a new, abundant superfamily of mammalian LTR-transposons.
    Smit AF;
    Nucleic Acids Res 1993;21:1863-1872 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERVL-MaLR Article

Hit Statistics

The model is 390 positions long. The average length of non-redundant hits to the model is 288.6. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 7211 33014 5398 17044
Homo sapiens 12106 133332 11224 91052

External Database Links

  • Repbase : MLT1B [Requires Repbase registration]