MLT1A (DF0001126)

MLT1A Long Terminal Repeat for ERVL-MaLR retrotransposon

Description

MLT1A (Mammalian LTR Transposon) has 5 bp TSDs. This is an intermediate subfamily between MSTD and MLT1C. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).

Synonyms: MLT1A0

References

  1. Identification of a new, abundant superfamily of mammalian LTR-transposons.
    Smit AF;
    Nucleic Acids Res 1993;21:1863-1872 Pubmed

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERVL-MaLR Article

Hit Statistics

The model is 374 positions long. The average length of non-redundant hits to the model is 282. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 6568 35406 4503 18785
Homo sapiens 9688 156777 9179 113271

External Database Links

  • Repbase : MLT1A0 [Requires Repbase registration]