hAT-Tip100 DNA transposon, Zaphod subfamily
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ZAPHOD is a hAT DNA transposon with imperfect 14bp TIRs and 8bp TSDs. Most copies are an internal deletion product missing 990..3586. MER115 represents an effectively identical, internal deletion of Zaphod.
|Class||Cut and Paste|
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 4079 positions long. The average length of non-redundant hits to the model is 459.9. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : ZAPHOD [Requires Repbase registration]