Putative CR1 (Chicken Repeat 1) retrotransposon, X1_LINE subfamily
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X1_LINE dispersed before mammalian diversification. It has similarity to a CR1 element ORF; however the 5' end is low complexity and purine-rich. It may be that this is a CR1-derived SINE.
Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.
Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka J;
Genome Res 2007;17:992-1004 Pubmed
Repetitive sequences in complex genomes: structure and evolution.
Jurka J, Kapitonov VV, Kohany O, Jurka MV;
Annu Rev Genomics Hum Genet 2007;8:241-259 Pubmed
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 645 positions long. The average length of non-redundant hits to the model is 307.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|