Interspersed repeats conserved in mammals and birds, UCON21 subfamily
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An incomplete reconstruction of UCON21 shows hints of this being a large palindrome. The 5' end is particularly uncertain. It has been tentatively classified as a DNA transposon. Found in human and chicken.
Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.
Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka J;
Genome Res 2007;17:992-1004 Pubmed
Repetitive sequences in complex genomes: structure and evolution.
Jurka J, Kapitonov VV, Kohany O, Jurka MV;
Annu Rev Genomics Hum Genet 2007;8:241-259 Pubmed
|Class||Cut and Paste|
Note: Uncertain classification.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 327 positions long. The average length of non-redundant hits to the model is 175.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|