U4 (DF0001078)

This model represents a noncoding RNA gene. Some ncRNA genes have transformed into, or become assimilated into transposons. Others occur in sufficient copy number that ab initio repeat finders may classify them as repetitive elements. This entry is used to correctly identify the gene and its pseudogenes and prevent misannotation.

U4 snRNA (spliceosomal RNA) gene / pseudogene

Description

U4 snRNA genes are multicopy, and have spawned >100 pseudogenes in human.

Classification

Accession Name Wikipedia
Type ncRNA Gene Article
Class snRNA Article
Superfamily U4 Article

Hit Statistics

The model is 145 positions long. The average length of non-redundant hits to the model is 111.7. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Mus musculus 93 109 70 84
Homo sapiens 127 182 103 143
Danio rerio 30 33 29 31

External Database Links