PRIMA4_LTR (Long Terminal Repeat) for PRIMA4 endogenous retrovirus
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PRIMA4_LTR is the long terminal repeat for the PRIMA4 endogenous retrovirus. The internal part of PRIMA4 is PRIMA4-int. PRIMA4 is related to the Class I retroviruses, including leukemia viruses. Solo LTRs are flanked by 4bp TSDs.
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 594 positions long. The average length of non-redundant hits to the model is 394.2. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : PRIMA4_LTR [Requires Repbase registration]