Internal region of PRIMA4 endogenous retrovirus, PRIMA4-int subfamily
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PRIMA4 is an autonomous, endogenous retrovirus with 4bp TSDs. The full element is comprised of this internal region, and the long terminal repeats, PRIMA4_LTR. The PRIMA4 is an ancient ERV, related to the Class I retroviruses, including leukemia viruses. PRIMA4 is also one of the key factors in the MER4-group evolution. MER4-int is a non-autonomous derivative of PRIMA4 (analogous to a relation between MER41-int and PRIMA41).
Number of matches to this model that meet the "Gathering" threshold and more stringent "Trusted" threshold. For each threshold, two numbers are shown: (1) the number of matches to this model after removing redundant hits to other models ("non-redundant"), and (2) the total number of matches above threshold, including those with better scoring matches to other models ("all hits").
The model is 8270 positions long. The average length of non-redundant hits to the model is 541.5. This table shows the number of hits above score thresholds:
|non-redundant||all hits||non-redundant||all hits|
External Database Links
- Repbase : PRIMA4_I [Requires Repbase registration]