PRIMA4-int (DF0001053)

Internal region of PRIMA4 endogenous retrovirus, PRIMA4-int subfamily

Description

PRIMA4 is an autonomous, endogenous retrovirus with 4bp TSDs. The full element is comprised of this internal region, and the long terminal repeats, PRIMA4_LTR. The PRIMA4 is an ancient ERV, related to the Class I retroviruses, including leukemia viruses. PRIMA4 is also one of the key factors in the MER4-group evolution. MER4-int is a non-autonomous derivative of PRIMA4 (analogous to a relation between MER41-int and PRIMA41).

Synonyms: PRIMA4_I

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERV1 Article

Hit Statistics

The model is 8270 positions long. The average length of non-redundant hits to the model is 541.5. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 410 5751 294 4264

External Database Links

  • Repbase : PRIMA4_I [Requires Repbase registration]