PRIMA41-int (DF0001052)

Internal region of PRIMA41 endogenous retrovirus, PRIMA41-int subfamily

Description

This is the internal region of the PRIMA41, an endogenous retrovirus, complete with Gag, Pol and Env genes and flanked by MER41C/B LTRs. It lost the main part of its internal coding sequence during formation of MER41A LTRs. The lost part has been replaced by non-coding sequences common for the MER4-group. PRIMA41 is related to leukemia viruses.

Synonyms: PRIMA41

Classification

Accession Name Wikipedia
Type Retrotransposon Article
Class LTR Article
Superfamily ERV1 Article

Hit Statistics

The model is 7756 positions long. The average length of non-redundant hits to the model is 756. This table shows the number of hits above score thresholds:

Species Gathering Trusted
non-redundant all hits non-redundant all hits
Homo sapiens 964 12379 821 9579

External Database Links

  • Repbase : PRIMA41 [Requires Repbase registration]